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Pumpkin Pesto Cheese Stuffed Shells Recipe

If you’re looking for a cozy yet unexpectedly fresh meal, this Pumpkin Pesto Cheese Stuffed Shells Recipe is a total winner. It’s got this lovely creamy pumpkin sauce that’s subtly spiced and perfectly complemented by savory sausage and cheesy stuffed jumbo pasta shells. Every bite feels like a warm hug, especially on chilly evenings or when you want to impress without too much fuss.

What makes this Pumpkin Pesto Cheese Stuffed Shells Recipe truly special is how it combines comforting, familiar flavors with a touch of gourmet flair. The pumpkin adds a silky richness that balances perfectly with the zing of basil pesto, making it a wonderful dish for fall dinners or anytime you want something a little different yet utterly satisfying. I promise, once you try it, it’ll become a favorite for your rotation!

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Why This Recipe Works

  • Balanced Flavors: Pumpkin puree brings gentle sweetness, while pesto and sausage add savory depth.
  • Creamy & Comforting: The ricotta and fontina cheese mix creates a luscious filling that melts beautifully in each shell.
  • Easy Assembly: Stuffed shells are simple to prepare, making it great for meal prep or feeding a crowd.
  • Versatile Serving: Pairs well with fresh basil and can be adapted with different proteins or herbs.

Ingredients & Why They Work

The ingredients in this Pumpkin Pesto Cheese Stuffed Shells Recipe are thoughtfully chosen to complement each other in flavor and texture, plus they are easy to find at most grocery stores. Keep your eyes out for fresh pesto and quality ricotta to elevate the dish even more.

  • Extra virgin olive oil: Adds richness and a subtle fruity note to brown the sausage evenly.
  • Ground chicken sausage: Juicy and less fatty than pork, it brings savory flavor without overwhelming the pumpkin.
  • Red bell pepper: Offers a mild sweetness and color contrast in the sauce.
  • Pumpkin puree: The star ingredient, providing creamy body and natural sweetness.
  • Vodka: Adds a slight tang and helps meld the flavors in the sauce.
  • Whole milk: Ensures a rich, creamy sauce texture without heaviness.
  • Dried oregano: Gives a warm herbal note that complements both sausage and cheese.
  • Crushed red pepper flakes: Just a pinch for gentle heat to balance sweetness.
  • Jumbo shells: Perfectly sized to hold a generous cheese filling.
  • Ricotta cheese: Soft, mild, and creamy, it binds the filling beautifully.
  • Fontina cheese: Melts wonderfully with a slight nuttiness to enrich the mix.
  • Basil pesto: A fresh, vibrant burst of herbaceous flavor to brighten every bite.
  • Mozzarella cheese: Adds a bubbly golden crust when baked on top.
  • Fresh basil: Essential finishing touch that adds color and fragrance.
  • Salt and pepper: To taste, balancing all the ingredients in harmony.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Tweak to Your Taste

I love how forgiving this Pumpkin Pesto Cheese Stuffed Shells Recipe is when it comes to personalization. You can easily swap ingredients or adjust seasoning to suit your family’s preferences — and it’ll still taste amazing.

  • Protein Options: I’ve used spicy Italian sausage instead of chicken sausage for a punchier flavor, and it’s fantastic for those who like a bit of heat.
  • Vegetarian Variation: Skip the sausage and add sautéed mushrooms or spinach for a veggie-packed version I often make for Meatless Mondays.
  • Extra Creamy: Stir in a little mascarpone or heavy cream for an ultra-luxurious filling.
  • Herbal Twist: Swap oregano for fresh thyme or sage depending on what you have on hand — each brings a unique warmth.

Step-by-Step: How I Make Pumpkin Pesto Cheese Stuffed Shells Recipe

Step 1: Brown the Sausage & Build the Sauce

Start by heating the olive oil in a large pot over medium-high heat and add the ground chicken sausage. Break it up while cooking until browned and cooked through—this is where those savory flavors get locked in. Then, reduce to low heat and add chopped red bell pepper, pumpkin puree, vodka, whole milk, oregano, crushed red pepper flakes, and a pinch of salt and pepper. Let it simmer gently for about 15 minutes, stirring occasionally until the sauce thickens slightly. This step is key to developing a rich, creamy pumpkin sauce that clings perfectly to the shells.

Step 2: Cook the Jumbo Shells

While the sauce simmers, cook your jumbo shells according to the package directions—usually boiling them until they’re al dente. Be careful not to overcook because they will finish baking in the oven and can get mushy if too soft. Drain and set aside, spreading them out gently on a sheet pan or baking dish so they don’t stick together.

Step 3: Mix the Cheesy Filling

In a medium bowl, combine the ricotta cheese, shredded fontina, and half a cup of basil pesto. Stir it all together until smooth and creamy, then season lightly with salt and pepper if needed. This mixture is what gives stuffed shells their irresistible creaminess and melds wonderfully with the pumpkin sauce.

Step 4: Assemble Your Stuffed Shells

Lightly grease a 9×13 inch baking dish, then spoon about three-quarters of your pumpkin sauce on the bottom. Take each cooked pasta shell and carefully spoon roughly a tablespoon of the cheese filling inside, then place them seam side up in the sauce-lined dish. Once you’ve stuffed all your shells, pour over the remaining pumpkin sauce and drizzle the rest of your pesto evenly on top. Sprinkle the shredded mozzarella to finish it off, adding that bubbly, golden crust everyone loves.

Step 5: Bake to Perfection

Bake uncovered at 350°F (175°C) for 20 to 25 minutes until the cheese topping is melted and lightly browned. Keep an eye on it in the last 5 minutes to avoid burning. When it emerges from the oven, scatter fresh basil leaves on top for that vibrant pop of color and aroma.

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Pro Tips for Making Pumpkin Pesto Cheese Stuffed Shells Recipe

  • Don’t Overcook Pasta: Slightly undercook shells since they bake later and will absorb sauce without getting mushy.
  • Simmer Sauce Slowly: Low and slow heat helps develop flavors and thickens pumpkin sauce for perfect coating.
  • Use Fresh Basil: Adding it right before serving keeps the dish bright and aromatic.
  • Layer Flavors Carefully: Combining pesto inside the cheese and drizzling on top balances herbaceousness throughout the dish.

How to Serve Pumpkin Pesto Cheese Stuffed Shells Recipe

This image shows a close-up of a cheesy pasta dish in a white bowl on a white marbled surface. The dish has several layers: at the bottom, there are large pasta shells coated in a creamy, yellowish sauce. Above that is a thick layer of melted cheese with a golden and slightly browned texture on top, giving a rich, bubbly look. Small green basil pieces are scattered on the cheese for color contrast. A fork is lifting some pasta shells covered in the sauce and cheese layers, showing the dish's creamy inside. Photo taken with an iphone --ar 4:5 --v 7

Garnishes

I’m a huge fan of adding fresh basil leaves when serving — they bring a lovely herbal freshness and make the dish feel vibrant and inviting. A light drizzle of good-quality extra virgin olive oil right before serving also adds a glossy finish and subtle richness you’ll notice every time.

Side Dishes

To keep things balanced, I usually serve these stuffed shells with a simple green salad tossed in a tangy vinaigrette or some roasted seasonal vegetables. Garlic bread is another classic pairing if you’re after a heartier meal—and it’s perfect for sopping up the luscious pumpkin sauce.

Creative Ways to Present

For dinner parties or special occasions, I like to arrange the shells in individual ramekins or small cast-iron skillets. Drizzling a bit of pesto and garnishing with microgreens adds an elegant touch without extra effort. It always sparks compliments and makes the meal feel a little more festive.

Make Ahead and Storage

Storing Leftovers

Store any leftovers in an airtight container in the fridge; the flavors actually deepen overnight. I usually separate the shells with a layer of parchment paper to avoid sticking, and they keep well for up to 3 days.

Freezing

This Pumpkin Pesto Cheese Stuffed Shells Recipe freezes beautifully, making it great for meal prep. Freeze unbaked shells assembled in a baking dish, wrapped tightly with foil and plastic wrap, for up to 3 months. When ready, just thaw overnight in the fridge and bake as directed.

Reheating

To reheat, cover the shells with foil to prevent drying out and bake at 350°F for about 20 minutes, or microwave individual portions covered to keep them moist. Adding a little extra pesto or a splash of milk before reheating can freshen up the sauce and cheese texture.

FAQs

  1. Can I use canned pumpkin for this recipe?

    Yes! Canned pumpkin puree works perfectly here. Just be sure to use pure pumpkin puree and not pumpkin pie filling, which contains added spices and sweeteners.

  2. Can I make this recipe vegetarian?

    Absolutely. Simply omit the chicken sausage and substitute with sautéed mushrooms, spinach, or your favorite vegetables to keep it hearty and flavorful.

  3. Is there a gluten-free option?

    Yes, you can use gluten-free jumbo pasta shells or even substitute with gluten-free manicotti. Just adjust cooking times according to package instructions.

  4. Can I prepare this recipe ahead of time?

    Definitely! Assemble the shells and sauce a day in advance, then refrigerate and bake when ready. This makes for a convenient and stress-free dinner option.

  5. What wine pairs well with Pumpkin Pesto Cheese Stuffed Shells?

    A crisp white wine like Pinot Grigio or Sauvignon Blanc complements the rich, creamy flavors without overpowering the pumpkin and pesto components.

Final Thoughts

This Pumpkin Pesto Cheese Stuffed Shells Recipe holds a special place in my kitchen because it brings together comfort and freshness in such a satisfying way. It’s one of those dishes I love making when I want to treat myself or share a warm meal with friends without endless fuss. Seriously, give it a try — once you experience that silky pumpkin sauce mingled with cheesy goodness and herbaceous pesto, you’ll keep coming back to it like I do!

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Pumpkin Pesto Cheese Stuffed Shells Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.5 from 5 reviews
  • Author: Sarah
  • Prep Time: 20 minutes
  • Cook Time: 25 minutes
  • Total Time: 45 minutes
  • Yield: 6 servings
  • Category: Main Course
  • Method: Baking
  • Cuisine: Italian-American

Description

Delicious Pumpkin Pesto Cheese Stuffed Shells featuring savory ground chicken sausage, creamy ricotta and fontina cheeses, and a flavorful pumpkin and vodka sauce, baked to golden perfection and topped with fresh basil.


Ingredients

Sauce and Filling

  • 2 tablespoons extra virgin olive oil
  • 1/2 pound ground chicken sausage
  • 1 red bell pepper, chopped
  • 1 cup pumpkin puree
  • 1/2 cup vodka
  • 1 cup whole milk
  • 2 teaspoons dried oregano
  • 1 pinch crushed red pepper flakes
  • Salt and pepper to taste

Pasta and Cheese Mixture

  • 1 pound jumbo shells
  • 16 ounces whole milk ricotta cheese
  • 2 cups shredded fontina cheese
  • 3/4 cup basil pesto (divided into 1/2 cup and 1/4 cup)
  • 8 ounces shredded mozzarella cheese

For Serving

  • Fresh basil leaves


Instructions

  1. Preheat Oven: Preheat your oven to 350°F and lightly grease a 9×13 inch baking dish; set it aside to prepare the stuffed shells.
  2. Make Pumpkin Sauce: Heat the extra virgin olive oil in a large pot over medium-high heat. Add the ground chicken sausage and cook until browned. Reduce the heat to low, then stir in the chopped red bell pepper, pumpkin puree, vodka, whole milk, dried oregano, crushed red pepper flakes, and a pinch of salt and pepper. Let the sauce simmer gently for 15 minutes, stirring occasionally, until it thickens slightly.
  3. Cook Pasta Shells: While the sauce is simmering, cook the jumbo pasta shells according to the package instructions until al dente. Drain and set aside to cool slightly before filling.
  4. Prepare Cheese Mixture: In a medium bowl, combine the whole milk ricotta cheese, shredded fontina cheese, and 1/2 cup of the basil pesto. Mix well until fully incorporated.
  5. Assemble Shells: Spoon three-quarters of the pumpkin sauce evenly into the bottom of the prepared baking dish. Working with one shell at a time, fill each jumbo shell with about one tablespoon of the cheese mixture. Arrange the filled shells in the baking dish over the sauce in a single layer.
  6. Add Remaining Sauce and Cheese: Spoon the remaining pumpkin sauce over the stuffed shells, then drizzle the remaining 1/4 cup of basil pesto evenly on top. Finally, sprinkle the shredded mozzarella cheese over everything.
  7. Bake: Place the dish in the preheated oven and bake for 25 minutes, or until the cheese is melted and lightly browned on top.
  8. Serve: Remove from the oven and garnish with fresh basil leaves. Serve warm and enjoy your flavorful pumpkin pesto cheese stuffed shells!

Notes

  • Use whole milk ricotta for creaminess; part-skim can be substituted for lower fat.
  • For a vegetarian version, substitute the chicken sausage with a plant-based sausage or omit it.
  • If you don’t have basil pesto, you can make a quick pesto using fresh basil, garlic, pine nuts, Parmesan cheese, and olive oil.
  • Ensure pasta shells are cooked al dente to prevent them from getting mushy after baking.
  • If you prefer a spicier dish, increase the crushed red pepper flakes slightly.
  • Allow the stuffed shells to rest for 5 minutes after baking to settle before serving.

Nutrition

  • Serving Size: 1 serving
  • Calories: 520 kcal
  • Sugar: 6 g
  • Sodium: 620 mg
  • Fat: 28 g
  • Saturated Fat: 12 g
  • Unsaturated Fat: 14 g
  • Trans Fat: 0 g
  • Carbohydrates: 45 g
  • Fiber: 4 g
  • Protein: 28 g
  • Cholesterol: 85 mg

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